PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g024430.1
Common NameMTR_2g024430
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 516aa    MW: 57550.6 Da    PI: 6.651
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g024430.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.48.2e-21124225399
                      EE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      k+lt sd+++ g +++p+++a+++      +  k+ s++l+++d +g+ We+++ yr+++ r+++t++W++Fv++++L  gD+v+F+ +++s +
  Medtr2g024430.1 124 KTLTLSDANNGGAFSVPRSCATSIfpqldlET-KQPSQELSVTDIHGKIWEFRHVYRGTPLRHLITTNWSKFVDEKKLVCGDSVIFMKKKNSFG 216
                      788889**********************9633.334679************************************************8888999 PP

                      ..EEEEE-S CS
               B3  91 elvvkvfrk 99 
                        +v+++r+
  Medtr2g024430.1 217 DIFVGIRRH 225
                      9******97 PP

2Auxin_resp44.75.7e-16241320183
       Auxin_resp   1 aahaastksvFevvYnPra.stseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a++ a+++ +Fev Y+P + +  +Fvv ++ ve+a+k+++  Gm++k+++ +edss+r     Gt++++s+      pn +Wr+L+
  Medtr2g024430.1 241 AVELANKNIAFEVEYHPTVeGFCDFVVDAKVVEDAMKINWNCGMKIKFSLKNEDSSKRWSvfKGTISALSA------PNRPWRMLE 320
                      678899999********962689*********************************9976689****9999......688999985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010199.3E-11119226IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-23121224IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.039122226IPR003340B3 DNA binding domain
CDDcd100172.01E-16124224No hitNo description
PfamPF023622.2E-17124225IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-27124226IPR015300DNA-binding pseudobarrel domain
PfamPF065075.5E-13241319IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MVEPKISAIS PPQPSRVEPK LWQYCAGHSV KIPKLHSKVY YFPQGHLEHA CLNFPNTETL  60
SLLDGHRPFN PCIVSAVDYL ADPHTDEVFV KLLLTPITDG CVHEPPAEVR EDEPKGDEFV  120
SSGKTLTLSD ANNGGAFSVP RSCATSIFPQ LDLETKQPSQ ELSVTDIHGK IWEFRHVYRG  180
TPLRHLITTN WSKFVDEKKL VCGDSVIFMK KKNSFGDIFV GIRRHTKFGA AKITKESVME  240
AVELANKNIA FEVEYHPTVE GFCDFVVDAK VVEDAMKINW NCGMKIKFSL KNEDSSKRWS  300
VFKGTISALS APNRPWRMLE VNWDGPEIPH NPKQSPWEVE LISYIPALNL QLPPTKRLRA  360
AQGSTSLDNI ERSSIPMIDF QQSPAKSLNQ ALLDCDTFIE GMQRAQDKKN STATTTNFLN  420
VKANDLIEKN SMARLDIVSI ESNISTPIFG DLSPLNHSIL NPFETKFDGS QKCNTKEVNP  480
GSFILFGKMI HLHPVESNLH DSATKGEDGC MGCNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_B5e-502034422358Auxin response factor 1
4ldy_A5e-502034422358Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462902.10.0auxin response factor
TrEMBLA0A072V5590.0A0A072V559_MEDTR; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16207210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-103auxin response factor 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]